Data Analysis
The “Analysis Portal” aims to provide the most appropriate analysis and visualization functionality for each data type. It can refer to multiple apps/platforms because no one platform supports all data types. The team at Memorial Sloan Kettering Cancer Center (MSK) develops, adapts, and maintains all the component apps/platforms for the Gray Foundation-generated data. Below, we describe the ones that will be available for the Gray Foundation consortium and their primary data targets.
cBioPortal
The cBioPortal for Cancer Genomics was originally developed at Memorial Sloan Kettering Cancer Center (MSK) for sharing of genomics data. For the Gray Foundation, the data which are available include:
- Copy Number Variation (CNV)
- Gene Expression (RNA-seq)
- Mutations
CELLxGENE
CELLxGENE ("cell-by-gene") is an interactive data explorer for single-cell datasets.
- scRNA-seq datasets
Minerva Viewer
Minerva is an image viewer with multiple layers and interactive zooming/panning.
Gray foundation datasets visualizable through this app:
- t-CyCIF